Buchfink11 - SeqAn API Documentation

# Tag Buchfink11
Specialization for ReducedAminoAcid#

Defined in | seqan/reduced_aminoacid.h
Signature | `typedef Buchfink11 Tag<Buchfink11_>;`

## Detailed Description

This is the 11-character reduction defined by Buchfink et al, 2014, https://www.ncbi.nlm.nih.gov/pubmed/25402007

This alphabet is used by tool Diamond.

Since it was created from the 20-letter alphabet the clusters in SeqAn are not identical (they contain more symbols). This is the clustering:

    'A', // A S T X
      'B', // B D E K N O Q R Z
      'C', // C U
      'F', // F *
      'G', // G
      'H', // H
      'I', // I J L V
      'M', // M
      'P', // P
      'W', // W
      'Y'  // Y

#### Dox Sources

    /*!
     * @tag Buchfink11
     *
     * @headerfile seqan/reduced_aminoacid.h
     *
     * @brief Specialization for @link ReducedAminoAcid @endlink#
     *
     * @signature typedef Buchfink11 Tag<Buchfink11_>;
     *
     * This is the 11-character reduction defined by Buchfink et al, 2014, <a href="
     * https://www.ncbi.nlm.nih.gov/pubmed/25402007">https://www.ncbi.nlm.nih.gov/pu
     * bmed/25402007</a>
     *
     * This alphabet is used by tool Diamond.
     *
     * Since it was created from the 20-letter alphabet the clusters in SeqAn are
     * not identical (they contain more symbols). This is the clustering:
     *
     * @code{.txt}
     *   'A', // A S T X
     *   'B', // B D E K N O Q R Z
     *   'C', // C U
     *   'F', // F *
     *   'G', // G
     *   'H', // H
     *   'I', // I J L V
     *   'M', // M
     *   'P', // P
     *   'W', // W
     *   'Y'  // Y
     * @endcode
     */